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1

Single Amino Acid Change Underlies Distinct Roles of H2A.Z Subtypes in Human Syndrome

Greenberg, Rachel S., Long, Hannah K., Swigut, Tomek, Wysocka, Joanna

Journal:

Year:

2019

Language:

english

File:

PDF, 15.12 MB

english, 2019

2

Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses

Hamperl, Stephan, Bocek, Michael J., Saldivar, Joshua C., Swigut, Tomek, Cimprich, Karlene A.

Journal:

Year:

2017

Language:

english

File:

PDF, 5.88 MB

english, 2017

3

Genome-wide mapping of global-to-local genetic effects on human facial shape

Claes, Peter, Roosenboom, Jasmien, White, Julie D., Swigut, Tomek, Sero, Dzemila, Li, Jiarui, Lee, Myoung Keun, Zaidi, Arslan, Mattern, Brooke C., Liebowitz, Corey, Pearson, Laurel, González, Tomás, L

Journal:

Nature Genetics

Year:

2018

Language:

english

File:

PDF, 2.64 MB

english, 2018

4

Epigenomic and Transcriptomic Changes During Human RPE EMT in a Stem Cell Model of Epiretinal Membrane Pathogenesis and Prevention by Nicotinamide

Boles, Nathan C., Fernandes, Marie, Swigut, Tomasz, Srinivasan, Rajini, Schiff, Lauren, Rada-Iglesias, Alvaro, Wang, Qingjie, Saini, Janmeet S., Kiehl, Thomas, Stern, Jeffrey H., Wysocka, Joanna, Blen

Journal:

Stem Cell Reports

Year:

2020

File:

PDF, 4.58 MB

2020

5

WDR5 Associates with Histone H3 Methylated at K4 and Is Essential for H3 K4 Methylation and Vertebrate Development

Joanna Wysocka, Tomek Swigut, Thomas A. Milne, Yali Dou, Xin Zhang, Alma L. Burlingame, Robert G. Roeder, Ali H. Brivanlou, C. David Allis

Journal:

Year:

2005

Language:

english

File:

PDF, 899 KB

english, 2005

6

HIV-1 Nef Binds the DOCK2–ELMO1 Complex to Activate Rac and Inhibit Lymphocyte Chemotaxis

Janardhan, Ajit, Swigut, Tomek, Hill, Brian, Myers, Michael P., Skowronski, Jacek

Journal:

Year:

2004

Language:

english

File:

PDF, 475 KB

english, 2004

7

Zscan4 binds nucleosomal microsatellite DNA and protects mouse two-cell embryos from DNA damage

Srinivasan, Rajini, Nady, Nataliya, Arora, Neha, Hsieh, Laura J., Swigut, Tomek, Narlikar, Geeta J., Wossidlo, Mark, Wysocka, Joanna

Journal:

Science Advances

Year:

2020

File:

PDF, 1.70 MB

2020

8

DIPG-13. TRANSCRIPTIONAL DEPENDENCIES IN DIFFUSE INTRINSIC PONTINE GLIOMA

Nagaraja, Surya, Vitanza, Nicholas, Woo, Pamelyn, Taylor, Kathryn, Liu, Fang, Zhang, Lei, Li, Meng, Meng, Wei, Ponnuswami, Anitha, Sun, Wenchao, Ma, Jie, Hulleman, Esther, Swigut, Tomek, Wysocka, Joan

Journal:

Year:

2017

Language:

english

File:

PDF, 81 KB

english, 2017

9

Two elements target SIV Nef to the AP-2 clathrin adaptor complex, but only one is required for the induction of CD4 endocytosis

Lock, Martin, Greenberg, Michael E., Iafrate, A. John, Swigut, Tomek, Muench, Jan, Kirchhoff, Frank, Shohdy, Nadim, Skowronski, Jacek

Journal:

The EMBO Journal

Year:

1999

Language:

english

File:

PDF, 590 KB

english, 1999

10

Disrupting Surfaces of Nef Required for Downregulation of CD4 and for Enhancement of Virion Infectivity Attenuates Simian Immunodeficiency Virus Replication In Vivo

Iafrate, A. J., Carl, S., Bronson, S., Stahl-Hennig, C., Swigut, T., Skowronski, J., Kirchhoff, F.

Journal:

Journal of Virology

Year:

2000

Language:

english

File:

PDF, 412 KB

english, 2000

11

Jarid2/Jumonji Coordinates Control of PRC2 Enzymatic Activity and Target Gene Occupancy in Pluripotent Cells

Jamy C. Peng, Anton Valouev, Tomek Swigut, Junmei Zhang, Yingming Zhao, Arend Sidow, Joanna Wysocka

Journal:

Year:

2009

Language:

english

File:

PDF, 1.37 MB

english, 2009

12

Importance of the N-Distal AP-2 Binding Element in Nef for Simian Immunodeficiency Virus Replication and Pathogenicity in Rhesus Macaques

Brenner, M., Munch, J., Schindler, M., Wildum, S., Stolte, N., Stahl-Hennig, C., Fuchs, D., Matz-Rensing, K., Franz, M., Heeney, J., Ten Haaft, P., Swigut, T., Hrecka, K., Skowronski, J., Kirchhoff, F

Journal:

Journal of Virology

Year:

2006

Language:

english

File:

PDF, 931 KB

english, 2006

13

H3K27 Demethylases, at Long Last

Tomek Swigut, Joanna Wysocka

Journal:

Year:

2007

Language:

english

File:

PDF, 309 KB

english, 2007

14

Nef Proteins from Diverse Groups of Primate Lentiviruses Downmodulate CXCR4 To Inhibit Migration to the Chemokine Stromal Derived Factor 1

Hrecka, K., Swigut, T., Schindler, M., Kirchhoff, F., Skowronski, J.

Journal:

Journal of Virology

Year:

2005

Language:

english

File:

PDF, 747 KB

english, 2005

15

Mechanism for down-regulation of CD28 by Nef

Journal:

The EMBO Journal

Year:

2001

Language:

english

File:

PDF, 532 KB

english, 2001

16

Cooperative Interactions of Simian Immunodeficiency Virus Nef, AP-2, and CD3- Mediate the Selective Induction of T-Cell Receptor-CD3 Endocytosis

Swigut, T., Greenberg, M., Skowronski, J.

Journal:

Journal of Virology

Year:

2003

Language:

english

File:

PDF, 1.93 MB

english, 2003

17

T-Cell Receptor:CD3 Down-Regulation Is a Selected In Vivo Function of Simian Immunodeficiency Virus Nef but Is Not Sufficient for Effective Viral Replication in Rhesus Macaques

Munch, J., Janardhan, A., Stolte, N., Stahl-Hennig, C., ten Haaft, P., Heeney, J. L., Swigut, T., Kirchhoff, F., Skowronski, J.

Journal:

Journal of Virology

Year:

2002

Language:

english

File:

PDF, 914 KB

english, 2002

18

Contribution of human embryonic stem cells to mouse blastocysts

Daylon James, Scott A. Noggle, Tomasz Swigut, Ali H. Brivanlou

Journal:

Developmental Biology

Year:

2006

Language:

english

File:

PDF, 1.25 MB

english, 2006

19

Simian and Human Immunodeficiency Virus Nef Proteins Use Different Surfaces To Downregulate Class I Major Histocompatibility Complex Antigen Expression

Swigut, T., Iafrate, A. J., Muench, J., Kirchhoff, F., Skowronski, J.

Journal:

Journal of Virology

Year:

2000

Language:

english

File:

PDF, 2.28 MB

english, 2000

20

Distinct transcriptional responses elicited by unfolded nuclear or cytoplasmic protein in mammalian cells

Miyazaki, Yusuke, Chen, Ling-chun, Chu, Bernard W, Swigut, Tomek, Wandless, Thomas J

Journal:

Year:

2015

Language:

english

File:

PDF, 3.00 MB

english, 2015

21

Disrupting Surfaces of Nef Required for Downregulation of CD4 and for Enhancement of Virion Infectivity Attenuates Simian Immunodeficiency Virus Replication In Vivo

Iafrate, A. J., Carl, S., Bronson, S., Stahl-Hennig, C., Swigut, T., Skowronski, J., Kirchhoff, F.

Journal:

Journal of Virology

Year:

2000

Language:

english

File:

PDF, 22 KB

english, 2000

22

qDRIP: a method to quantitatively assess RNAâDNA hybrid formation genome-wide

Crossley, Magdalena P, Bocek, Michael J, Hamperl, Stephan, Swigut, Tomek, Cimprich, KarleneÂ A

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 3.24 MB

2020

23

A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling

Wysocka, Joanna, Swigut, Tomek, Xiao, Hua, Milne, Thomas A., Kwon, So Yeon, Landry, Joe, Kauer, Monika, Tackett, Alan J., Chait, Brian T., Badenhorst, Paul, Wu, Carl, Allis, C. David

Journal:

Year:

2006

Language:

english

File:

PDF, 472 KB

english, 2006

24

Epigenomic Annotation of Enhancers Predicts Transcriptional Regulators of Human Neural Crest

Rada-Iglesias, Alvaro, Bajpai, Ruchi, Prescott, Sara, Brugmann, Samantha A., Swigut, Tomek, Wysocka, Joanna

Journal:

Year:

2012

Language:

english

File:

PDF, 2.59 MB

english, 2012

25

Impact of Nef-Mediated Downregulation of Major Histocompatibility Complex Class I on Immune Response to Simian Immunodeficiency Virus

Swigut, T., Alexander, L., Morgan, J., Lifson, J., Mansfield, K. G., Lang, S., Johnson, R. P., Skowronski, J., Desrosiers, R.

Journal:

Journal of Virology

Year:

2004

Language:

english

File:

PDF, 608 KB

english, 2004

26

Enhancer Divergence and cis-Regulatory Evolution in the Human and Chimp Neural Crest

Prescott, Sara L., Srinivasan, Rajini, Marchetto, Maria Carolina, Grishina, Irina, Narvaiza, Iñigo, Selleri, Licia, Gage, Fred H., Swigut, Tomek, Wysocka, Joanna

Journal:

Year:

2015

Language:

english

File:

PDF, 5.81 MB

english, 2015

27

A unique chromatin signature uncovers early developmental enhancers in humans

Rada-Iglesias, Alvaro, Bajpai, Ruchi, Swigut, Tomek, Brugmann, Samantha A., Flynn, Ryan A., Wysocka, Joanna

Journal:

Year:

2010

Language:

english

File:

PDF, 704 KB

english, 2010

28

Transcriptional Dependencies in Diffuse Intrinsic Pontine Glioma

Nagaraja, Surya, Vitanza, Nicholas A., Woo, Pamelyn J., Taylor, Kathryn R., Liu, Fang, Zhang, Lei, Li, Meng, Meng, Wei, Ponnuswami, Anitha, Sun, Wenchao, Ma, Jie, Hulleman, Esther, Swigut, Tomek, Wyso

Journal:

Year:

2017

Language:

english

File:

PDF, 6.04 MB

english, 2017

29

Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators

Liu, Nian, Lee, Cameron H., Swigut, Tomek, Grow, Edward, Gu, Bo, Bassik, Michael C., Wysocka, Joanna

Journal:

Year:

2017

Language:

english

File:

PDF, 11.15 MB

english, 2017

30

Sequence-specific regulator Prdm14 safeguards mouse ESCs from entering extraembryonic endoderm fates

Ma, Ziyang, Swigut, Tomek, Valouev, Anton, Rada-Iglesias, Alvaro, Wysocka, Joanna

Journal:

Nature Structural and Molecular Biology

Year:

2010

Language:

english

File:

PDF, 1.39 MB

english, 2010

31

Fallen Immortals

Tomek Swigut, Joanna Wysocka

Journal:

Year:

2009

Language:

english

File:

PDF, 479 KB

english, 2009

32

Chromatin remodelling factor Mll1 is essential for neurogenesis from postnatal neural stem cells

Lim, Daniel A., Huang, Yin-Cheng, Swigut, Tomek, Mirick, Anika L., Garcia-Verdugo, Jose Manuel, Wysocka, Joanna, Ernst, Patricia, Alvarez-Buylla, Arturo

Journal:

Year:

2009

Language:

english

File:

PDF, 724 KB

english, 2009

33

Zika Virus Infection Induces Cranial Neural Crest Cells to Produce Cytokines at Levels Detrimental for Neurogenesis

Bayless, Nicholas L., Greenberg, Rachel S., Swigut, Tomek, Wysocka, Joanna, Blish, Catherine A.

Journal:

Cell Host & Microbe

Year:

2016

Language:

english

File:

PDF, 2.66 MB

english, 2016

34

CHD7 cooperates with PBAF to control multipotent neural crest formation

Bajpai, Ruchi, Chen, Denise A., Rada-Iglesias, Alvaro, Zhang, Junmei, Xiong, Yiqin, Helms, Jill, Chang, Ching-Pin, Zhao, Yingming, Swigut, Tomek, Wysocka, Joanna

Journal:

Year:

2010

Language:

english

File:

PDF, 985 KB

english, 2010

35

Mll3 and Mll4 Facilitate Enhancer RNA Synthesis and Transcription from Promoters Independently of H3K4 Monomethylation

Dorighi, Kristel M., Swigut, Tomek, Henriques, Telmo, Bhanu, Natarajan V., Scruggs, Benjamin S., Nady, Nataliya, Still, Christopher D., Garcia, Benjamin A., Adelman, Karen, Wysocka, Joanna

Journal:

Year:

2017

Language:

english

File:

PDF, 3.66 MB

english, 2017

36

Transcription-coupled changes in nuclear mobility of mammalian cis-regulatory elements

Gu, Bo, Swigut, Tomek, Spencley, Andrew, Bauer, Matthew R., Chung, Mingyu, Meyer, Tobias, Wysocka, Joanna

Journal:

Year:

2018

Language:

english

File:

PDF, 3.93 MB

english, 2018

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